-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2971

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 51, 434
Couldn't classify 876, 944
Sorry, prediction snap_scaffold_2971-snap.1-T1 fails validation.
(AGC)	 AG	51-434	GT	AGG
(CGT)	 AG	876-944	GT	AGG
-recovered snap_scaffold_2971-snap.1-T1, internal, 51, 434
-recovered snap_scaffold_2971-snap.1-T1, internal, 876, 944
Couldn't classify 51, 383
Couldn't classify 876, 944
Sorry, prediction GeneMark_model.110716_t fails validation.
(AGC)	 AG	51-383	GT	CAG
(CCA)	 AG	405-434	GT	AGG
(CGT)	 AG	876-944	GT	AGG
-recovered GeneMark_model.110716_t, internal, 51, 383
-recovered GeneMark_model.110716_t, internal, 405, 434
-recovered GeneMark_model.110716_t, internal, 876, 944
Valid prediction for GlimmerHMM_glimmerT_63257-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63257-T1 51-499-terminal-1 is invalid.
Couldn't classify 876, 944
Sorry, prediction Augustus_model.g42231.t1 fails validation.
(ATG)	 AG	122-434	GT	AGG
(CGT)	 AG	876-944	GT	AGG
-recovered Augustus_model.g42231.t1, initial, 122, 434
-recovered Augustus_model.g42231.t1, internal, 122, 434
-recovered Augustus_model.g42231.t1, internal, 876, 944

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1090
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support