-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2963

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63255-T1
Couldn't classify 858, 1009
Sorry, prediction snap_scaffold_2963-snap.1-T1 fails validation.
(ATG)	 TA	156-420	GT	CAG
(CGT)	 AG	858-1009	GT	TGG
-recovered snap_scaffold_2963-snap.1-T1, initial, 156, 420
-recovered snap_scaffold_2963-snap.1-T1, internal, 858, 1009

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 14, 34
Sorry, prediction GeneMark_model.110713_t fails validation.
(GGA)	 AG	14-34	GT	GAG
(ACG)	 AG	233-265	GT	CTG
(GCT)	 AG	295-541	GA	AAG
-recovered GeneMark_model.110713_t, terminal, 295, 541
-recovered GeneMark_model.110713_t, internal, 14, 34
-recovered GeneMark_model.110713_t, internal, 233, 265

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1092
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support