-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2960

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 754, 967
Sorry, prediction Augustus_model.g42230.t1 fails validation.
(CTG)	 AG	754-967	GT	AGG
-recovered Augustus_model.g42230.t1, internal, 754, 967
Couldn't classify 754, 785
Couldn't classify 808, 967
Sorry, prediction GeneMark_model.110711_t fails validation.
(CTG)	 AG	754-785	GT	CAG
(GAA)	 AG	808-967	GT	AGG
-recovered GeneMark_model.110711_t, internal, 754, 785
-recovered GeneMark_model.110711_t, internal, 808, 967
Couldn't classify 787, 967
Sorry, prediction snap_scaffold_2960-snap.1-T1 fails validation.
(TCT)	 AG	787-967	GT	AGG
-recovered snap_scaffold_2960-snap.1-T1, internal, 787, 967
Valid prediction for GlimmerHMM_glimmerT_63254-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63254-T1 754-1054-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1093
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support