-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_296 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107217_t Couldn't classify 293, 410 Couldn't classify 6296, 6535 Sorry, prediction snap_scaffold_296-snap.2-T1 fails validation. (GGC) AG 293-410 GT GTG (GGC) AG 1027-1083 GT CGG (GTC) AG 1379-1522 GT TTG (GTA) AG 4125-4194 GT CGG (ACC) AG 6139-6279 GT AGG (GTG) AG 6296-6535 GT AGG add_exon() Sorry, snap_scaffold_296-snap.2-T1 6139-6279-terminal-1 is invalid. -recovered snap_scaffold_296-snap.2-T1, terminal, 6139, 6279 -recovered snap_scaffold_296-snap.2-T1, internal, 293, 410 -recovered snap_scaffold_296-snap.2-T1, internal, 1027, 1083 -recovered snap_scaffold_296-snap.2-T1, internal, 1379, 1522 -recovered snap_scaffold_296-snap.2-T1, internal, 4125, 4194 -recovered snap_scaffold_296-snap.2-T1, internal, 6139, 6279 -recovered snap_scaffold_296-snap.2-T1, internal, 6296, 6535 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61652-T1 Valid prediction for GeneMark_model.107216_t Valid prediction for GlimmerHMM_glimmerT_61651-T1 Couldn't classify 8079, 8252 Sorry, prediction snap_scaffold_296-snap.1-T1 fails validation. (ATG) AG 2599-3028 GT GAG (ATT) AG 7389-7479 GT AAG (TCA) AG 7497-7653 GT AGG (AGG) AG 8079-8252 GT GTG -recovered snap_scaffold_296-snap.1-T1, initial, 2599, 3028 -recovered snap_scaffold_296-snap.1-T1, terminal, 7389, 7479 -recovered snap_scaffold_296-snap.1-T1, internal, 2599, 3028 -recovered snap_scaffold_296-snap.1-T1, internal, 7389, 7479 -recovered snap_scaffold_296-snap.1-T1, internal, 7497, 7653 -recovered snap_scaffold_296-snap.1-T1, internal, 8079, 8252 Couldn't classify 815, 919 Sorry, prediction snap_scaffold_296-snap.3-T1 fails validation. (TGA) AG 815-919 GT ACG (CAA) AG 1813-2290 GT CAG (AAG) AG 2345-2476 GA GAG -recovered snap_scaffold_296-snap.3-T1, terminal, 2345, 2476 -recovered snap_scaffold_296-snap.3-T1, internal, 815, 919 -recovered snap_scaffold_296-snap.3-T1, internal, 1813, 2290 Couldn't classify 8087, 8193 Sorry, prediction GeneMark_model.107215_t fails validation. (ATG) AG 6063-6121 GT TGG (GGA) AG 6696-6806 GT AGG (TGA) AG 6836-6847 GT AGG (GAA) AG 6870-6909 GT AGG (GTC) AG 6961-6968 GT GGG (AGG) AG 7092-7175 GT ATG (CCC) AG 7429-7486 GT GGG (ACC) AG 7574-7653 GT AGG (AGA) AG 7682-7699 GT AGG (AGA) AG 7758-7763 GT AGG (AGA) AG 7784-7789 GT AGG (AGA) AG 7812-7826 GT AGG (GTA) AG 7849-7863 GT AGG (GGA) AG 7911-7916 GT AGG (CGA) AG 7938-7946 GT GAG (ACA) AG 7999-8037 GT ATG (AGG) AG 8087-8193 GT CAG -recovered GeneMark_model.107215_t, initial, 6063, 6121 add_exon() Sorry, GeneMark_model.107215_t 6836-6847-terminal-1 is invalid. -recovered GeneMark_model.107215_t, terminal, 6836, 6847 -recovered GeneMark_model.107215_t, internal, 6063, 6121 -recovered GeneMark_model.107215_t, internal, 6696, 6806 -recovered GeneMark_model.107215_t, internal, 6836, 6847 -recovered GeneMark_model.107215_t, internal, 6870, 6909 -recovered GeneMark_model.107215_t, internal, 6961, 6968 -recovered GeneMark_model.107215_t, internal, 7092, 7175 -recovered GeneMark_model.107215_t, internal, 7429, 7486 -recovered GeneMark_model.107215_t, internal, 7574, 7653 -recovered GeneMark_model.107215_t, internal, 7682, 7699 -recovered GeneMark_model.107215_t, internal, 7758, 7763 -recovered GeneMark_model.107215_t, internal, 7784, 7789 -recovered GeneMark_model.107215_t, internal, 7812, 7826 -recovered GeneMark_model.107215_t, internal, 7849, 7863 -recovered GeneMark_model.107215_t, internal, 7911, 7916 -recovered GeneMark_model.107215_t, internal, 7938, 7946 -recovered GeneMark_model.107215_t, internal, 7999, 8037 -recovered GeneMark_model.107215_t, internal, 8087, 8193 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5878, rend_intergenic: 293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 6535, rend_intergenic: 6001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 8476 -exon list size: 87 building trellis 1.1 2.2 3.4 4.5 5.6 6.7 7.9 9.0 10.1 11.2 12.4 13.5 14.6 15.7 16.9 18.0 19.1 20.2 21.3 22.5 23.6 24.7 25.8 27.0 28.1 29.2 30.3 31.5 32.6 33.7 34.8 36.0 37.1 38.2 39.3 40.4 41.6 42.7 43.8 44.9 46.1 47.2 48.3 49.4 50.6 51.7 52.8 53.9 55.1 56.2 57.3 58.4 59.6 60.7 61.8 62.9 64.0 65.2 66.3 67.4 68.5 69.7 70.8 71.9 73.0 74.2 75.3 76.4 77.5 78.7 79.8 80.9 82.0 83.1 84.3 85.4 86.5 87.6 88.8 89.9 91.0 92.1 93.3 94.4 95.5 96.6 97.8 98.9 -found 3 predictions from path traversal Error with prediction: snap lend_intergenic: 5878, rend_intergenic: 293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 6535, rend_intergenic: 6001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support