-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2957

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 985, 1035
Sorry, prediction GeneMark_model.110710_t fails validation.
(ATG)	 GG	237-244	GT	CGG
(AGA)	 AG	660-851	GT	AGG
(AGG)	 AG	893-943	GT	AGG
(AGG)	 AG	985-1035	GT	AGG
-recovered GeneMark_model.110710_t, initial, 237, 244
-recovered GeneMark_model.110710_t, internal, 660, 851
-recovered GeneMark_model.110710_t, internal, 893, 943
-recovered GeneMark_model.110710_t, internal, 985, 1035

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 278, 464
Couldn't classify 882, 991
Sorry, prediction pasa_asmbl_38610.p1 fails validation.
(CTC)	 TC	278-464	GT	AGG
(TAA)	 AG	882-991	TA	GGT
Couldn't classify 127, 464
Sorry, prediction GlimmerHMM_glimmerT_63252-T1 fails validation.
(CCC)	 AG	127-464	GT	AGG
(TAA)	 AG	882-994	GC	AGG
-recovered GlimmerHMM_glimmerT_63252-T1, terminal, 882, 994
-recovered GlimmerHMM_glimmerT_63252-T1, internal, 127, 464
-recovered GlimmerHMM_glimmerT_63252-T1, internal, 882, 994
Couldn't classify 41, 299
Couldn't classify 882, 990
Sorry, prediction snap_scaffold_2957-snap.1-T1 fails validation.
(GGC)	 AG	41-299	GT	CAG
(GTT)	 AG	328-464	GT	AGG
(TAA)	 AG	882-990	GT	AGG
-recovered snap_scaffold_2957-snap.1-T1, internal, 41, 299
-recovered snap_scaffold_2957-snap.1-T1, internal, 328, 464
-recovered snap_scaffold_2957-snap.1-T1, internal, 882, 990
Couldn't classify 219, 464
Sorry, prediction Augustus_model.g42228.t1 fails validation.
(CCC)	 AG	219-464	GT	AGG
(TAA)	 AG	882-994	GC	AGG
-recovered Augustus_model.g42228.t1, terminal, 882, 994
-recovered Augustus_model.g42228.t1, internal, 219, 464
-recovered Augustus_model.g42228.t1, internal, 882, 994

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1093
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support