-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2954

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 981, 1064
Sorry, prediction GeneMark_model.110708_t fails validation.
(ATG)	 CC	35-52	GT	AGG
(GGA)	 AG	444-524	GT	GTG
(GGG)	 AG	940-953	GT	GGG
(GGA)	 AG	981-1064	GC	ACG
-recovered GeneMark_model.110708_t, initial, 35, 52
-recovered GeneMark_model.110708_t, internal, 444, 524
-recovered GeneMark_model.110708_t, internal, 940, 953
-recovered GeneMark_model.110708_t, internal, 981, 1064
Couldn't classify 1, 52
Sorry, prediction HiQ_model.g42227.t1 fails validation.
(CCA)	 TC	1-52	GT	AGG
(GGA)	 AG	444-524	GT	GTG
(TGA)	 AG	902-904	GT	GAG
-recovered HiQ_model.g42227.t1, terminal, 902, 904
-recovered HiQ_model.g42227.t1, internal, 444, 524
-recovered HiQ_model.g42227.t1, internal, 902, 904

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1094
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support