-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2952

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 79, 206
Couldn't classify 838, 1051
Sorry, prediction snap_scaffold_2952-snap.1-T1 fails validation.
(AGT)	 AG	79-206	GT	AGG
(GAA)	 AG	838-1051	GT	AGG
-recovered snap_scaffold_2952-snap.1-T1, internal, 79, 206
-recovered snap_scaffold_2952-snap.1-T1, internal, 838, 1051
Couldn't classify 76, 206
Couldn't classify 838, 1051
Sorry, prediction Augustus_model.g42226.t1 fails validation.
(CAG)	 AG	76-206	GT	AGG
(GAA)	 AG	838-1051	GT	AGG
-recovered Augustus_model.g42226.t1, internal, 76, 206
-recovered Augustus_model.g42226.t1, internal, 838, 1051
Couldn't classify 67, 206
Couldn't classify 838, 1000
Sorry, prediction pasa_asmbl_38607.p2 fails validation.
(GTC)	 GT	67-206	GT	AGG
(GAA)	 AG	838-1000	GG	TTG
Couldn't classify 76, 206
Sorry, prediction GeneMark_model.110706_t fails validation.
(CAG)	 AG	76-206	GT	AGG
(GAC)	 AG	251-325	GT	GAG
(GAC)	 AG	354-392	GT	GAG
(GAG)	 AG	416-494	TG	AAT
-recovered GeneMark_model.110706_t, terminal, 416, 494
-recovered GeneMark_model.110706_t, internal, 76, 206
-recovered GeneMark_model.110706_t, internal, 251, 325
-recovered GeneMark_model.110706_t, internal, 354, 392
Couldn't classify 838, 1051
Sorry, prediction GlimmerHMM_glimmerT_63251-T1 fails validation.
(ATG)	 CC	88-206	GT	AGG
(GAA)	 AG	838-1051	GT	AGG
-recovered GlimmerHMM_glimmerT_63251-T1, initial, 88, 206
-recovered GlimmerHMM_glimmerT_63251-T1, internal, 838, 1051

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110707_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1094
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support