-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2951

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 73, 168
Couldn't classify 838, 921
Sorry, prediction GeneMark_model.110705_t fails validation.
(GGT)	 AG	73-168	GT	AGG
(GTG)	 AG	196-213	GT	AGG
(GTG)	 AG	241-276	GT	AGG
(GTG)	 AG	304-312	GT	AGG
(GTG)	 AG	340-348	GT	AGG
(GTG)	 AG	385-402	GT	AGG
(GTG)	 AG	430-456	GT	AGG
(GTG)	 AG	484-555	GT	AGG
(GTG)	 AG	583-591	GT	AGG
(GTG)	 AG	673-699	GT	AGG
(GTG)	 AG	727-735	GT	AGG
(GAC)	 AG	838-921	GT	GAG
-recovered GeneMark_model.110705_t, internal, 73, 168
-recovered GeneMark_model.110705_t, internal, 196, 213
-recovered GeneMark_model.110705_t, internal, 241, 276
-recovered GeneMark_model.110705_t, internal, 304, 312
-recovered GeneMark_model.110705_t, internal, 340, 348
-recovered GeneMark_model.110705_t, internal, 385, 402
-recovered GeneMark_model.110705_t, internal, 430, 456
-recovered GeneMark_model.110705_t, internal, 484, 555
-recovered GeneMark_model.110705_t, internal, 583, 591
-recovered GeneMark_model.110705_t, internal, 673, 699
-recovered GeneMark_model.110705_t, internal, 727, 735
-recovered GeneMark_model.110705_t, internal, 838, 921
Couldn't classify 838, 921
Sorry, prediction Augustus_model.g42225.t1 fails validation.
(ATG)	 CC	109-150	GT	AGG
(GAC)	 AG	838-921	GT	GAG
-recovered Augustus_model.g42225.t1, initial, 109, 150
-recovered Augustus_model.g42225.t1, internal, 838, 921
Valid prediction for GlimmerHMM_glimmerT_63250-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63250-T1 92-837-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1094
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support