-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_295

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6557, 6677
Sorry, prediction snap_scaffold_295-snap.1-T1 fails validation.
(ATG)	 AG	1116-1174	GT	AGG
(AAC)	 AG	6557-6677	GT	CTG
-recovered snap_scaffold_295-snap.1-T1, initial, 1116, 1174
-recovered snap_scaffold_295-snap.1-T1, internal, 1116, 1174
-recovered snap_scaffold_295-snap.1-T1, internal, 6557, 6677
Valid prediction for GeneMark_model.107213_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61650-T1
Couldn't classify 6367, 6400
Sorry, prediction snap_scaffold_295-snap.2-T1 fails validation.
(ATG)	 CA	2901-2907	GT	TGG
(AAG)	 AG	5530-5844	GT	TGG
(GAG)	 AG	5849-5928	GT	ATG
(GTT)	 AG	6367-6400	GT	TGG
-recovered snap_scaffold_295-snap.2-T1, initial, 2901, 2907
-recovered snap_scaffold_295-snap.2-T1, internal, 5530, 5844
-recovered snap_scaffold_295-snap.2-T1, internal, 5849, 5928
-recovered snap_scaffold_295-snap.2-T1, internal, 6367, 6400
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 649, 681
Sorry, prediction GeneMark_model.107214_t fails validation.
(AGT)	 AG	649-681	GT	GCG
(AGA)	 AG	709-780	GT	GGG
(AGA)	 AG	814-904	GT	AAG
(GAA)	 AG	1144-1298	GT	CGG
(AGA)	 AG	1583-1613	GT	GAG
-recovered GeneMark_model.107214_t, terminal, 1583, 1613
-recovered GeneMark_model.107214_t, internal, 649, 681
-recovered GeneMark_model.107214_t, internal, 709, 780
-recovered GeneMark_model.107214_t, internal, 814, 904
-recovered GeneMark_model.107214_t, internal, 1144, 1298
-recovered GeneMark_model.107214_t, internal, 1583, 1613
Valid prediction for GeneMark_model.107212_t
Valid prediction for GeneMark_model.107211_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6677, rend_intergenic: 2080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8479
-exon list size: 38


building trellis

2.5    
5.0    
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15.0    
17.5    
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22.5    
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35.0    
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40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
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90.0    
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95.0    
97.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6677, rend_intergenic: 2080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support