-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2945

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63249-T1
Couldn't classify 108, 260
Couldn't classify 452, 913
Sorry, prediction GeneMark_model.110702_t fails validation.
(AGC)	 AG	108-260	GT	AGG
(GTG)	 AG	452-913	GT	AGG
-recovered GeneMark_model.110702_t, internal, 108, 260
-recovered GeneMark_model.110702_t, internal, 452, 913
Couldn't classify 108, 260
Couldn't classify 452, 913
Sorry, prediction Augustus_model.g42223.t1 fails validation.
(AGC)	 AG	108-260	GT	AGG
(GTG)	 AG	452-913	GT	AGG
-recovered Augustus_model.g42223.t1, internal, 108, 260
-recovered Augustus_model.g42223.t1, internal, 452, 913
Valid prediction for GlimmerHMM_glimmerT_63248-T1
Couldn't classify 108, 260
Couldn't classify 452, 913
Sorry, prediction pasa_asmbl_38604.p1 fails validation.
(AGC)	 AG	108-260	GT	AGG
(GTG)	 AG	452-913	GT	AGG
-recovered pasa_asmbl_38604.p1, internal, 108, 260
-recovered pasa_asmbl_38604.p1, internal, 452, 913
Couldn't classify 108, 260
Couldn't classify 452, 913
Sorry, prediction snap_scaffold_2945-snap.1-T1 fails validation.
(AGC)	 AG	108-260	GT	AGG
(GTG)	 AG	452-913	GT	AGG
-recovered snap_scaffold_2945-snap.1-T1, internal, 108, 260
-recovered snap_scaffold_2945-snap.1-T1, internal, 452, 913

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1095
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support