-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_294

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_294-snap.2-T1
add_exon() Sorry, snap_scaffold_294-snap.2-T1 105-194-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_294-snap.2-T1 3779-3876-terminal-1 is invalid.
Valid prediction for GeneMark_model.107209_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3865, 4780
Sorry, prediction snap_scaffold_294-snap.1-T1 fails validation.
(GAA)	 AG	3865-4780	GT	CTG
(AGC)	 AG	8313-8387	GC	AAG
-recovered snap_scaffold_294-snap.1-T1, terminal, 8313, 8387
-recovered snap_scaffold_294-snap.1-T1, internal, 3865, 4780
-recovered snap_scaffold_294-snap.1-T1, internal, 8313, 8387
Couldn't classify 1176, 1193
Sorry, prediction GeneMark_model.107210_t fails validation.
(TAG)	 AG	1176-1193	GT	GAG
(GAG)	 AG	1219-1263	GT	TTG
(GAC)	 AG	1385-1559	CG	AGC
-recovered GeneMark_model.107210_t, terminal, 1385, 1559
-recovered GeneMark_model.107210_t, internal, 1176, 1193
-recovered GeneMark_model.107210_t, internal, 1219, 1263
Valid prediction for GeneMark_model.107207_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4623, rend_intergenic: 105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8487
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4623, rend_intergenic: 105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support