-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2933

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1065, 1083
Sorry, prediction GeneMark_model.110696_t fails validation.
(ATG)	 GC	511-536	GT	CAG
(GGA)	 AG	567-608	GT	GAG
(GGA)	 AG	658-684	GT	GAG
(GGA)	 AG	722-748	GT	GAG
(GCA)	 AG	786-812	GT	GAG
(GAG)	 AG	848-865	GC	ACG
(GGA)	 AG	1034-1039	GT	GAG
(GGG)	 AG	1065-1083	GT	GGG
-recovered GeneMark_model.110696_t, initial, 511, 536
-recovered GeneMark_model.110696_t, internal, 567, 608
-recovered GeneMark_model.110696_t, internal, 658, 684
-recovered GeneMark_model.110696_t, internal, 722, 748
-recovered GeneMark_model.110696_t, internal, 786, 812
-recovered GeneMark_model.110696_t, internal, 848, 865
-recovered GeneMark_model.110696_t, internal, 1034, 1039
-recovered GeneMark_model.110696_t, internal, 1065, 1083

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1096
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support