-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2931

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 65
Couldn't classify 1072, 1086
Sorry, prediction GeneMark_model.110694_t fails validation.
(GGT)	 AG	39-65	GT	GGG
(AGA)	 AG	87-221	GT	GGG
(AGA)	 AG	346-369	GT	GGG
(AGT)	 AG	399-413	GT	GGG
(AGA)	 AG	525-536	GT	AGG
(GTT)	 AG	586-591	GT	GGG
(AGA)	 AG	623-634	GT	AGG
(GTT)	 AG	762-767	GT	GGG
(GGG)	 AG	797-805	GT	GGG
(AGA)	 AG	989-1000	GT	AGG
(GGG)	 AG	1036-1044	GT	GGG
(TGA)	 AG	1072-1086	GT	GGG
-recovered GeneMark_model.110694_t, terminal, 525, 536
-recovered GeneMark_model.110694_t, terminal, 623, 634
-recovered GeneMark_model.110694_t, terminal, 989, 1000
-recovered GeneMark_model.110694_t, internal, 39, 65
-recovered GeneMark_model.110694_t, internal, 87, 221
-recovered GeneMark_model.110694_t, internal, 346, 369
-recovered GeneMark_model.110694_t, internal, 399, 413
-recovered GeneMark_model.110694_t, internal, 525, 536
-recovered GeneMark_model.110694_t, internal, 586, 591
-recovered GeneMark_model.110694_t, internal, 623, 634
-recovered GeneMark_model.110694_t, internal, 762, 767
-recovered GeneMark_model.110694_t, internal, 797, 805
-recovered GeneMark_model.110694_t, internal, 989, 1000
-recovered GeneMark_model.110694_t, internal, 1036, 1044
-recovered GeneMark_model.110694_t, internal, 1072, 1086

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1097
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support