-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_293

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2434, 2529
Sorry, prediction GeneMark_model.107205_t fails validation.
(GGA)	 AG	2434-2529	GT	AGG
(TGG)	 AG	2749-2778	GT	AGG
(AAA)	 AG	5276-5287	GT	GGG
(AAA)	 AG	5323-5331	GT	GGG
(AAA)	 AG	5415-5423	GT	GGG
(AAA)	 AG	5547-5555	GT	GGG
(AAA)	 AG	5639-5647	GT	GAG
(AGG)	 AG	5713-5718	GT	GGG
(AGA)	 AG	5756-5767	GT	AGG
(GGG)	 AG	5916-5924	GT	GGG
(TGG)	 AG	5966-5980	GT	GGG
(AGA)	 AG	6004-6048	GC	GAG
(GTG)	 AG	6087-6125	GT	ATG
(AGA)	 AG	6231-6341	GT	TTG
(AGA)	 AG	6456-6509	GT	AGG
(ACG)	 AG	6607-6624	GT	GGG
(AAA)	 AG	6655-6664	GG	GAG
-recovered GeneMark_model.107205_t, terminal, 6655, 6664
-recovered GeneMark_model.107205_t, internal, 2434, 2529
-recovered GeneMark_model.107205_t, internal, 2749, 2778
-recovered GeneMark_model.107205_t, internal, 5276, 5287
-recovered GeneMark_model.107205_t, internal, 5323, 5331
-recovered GeneMark_model.107205_t, internal, 5415, 5423
-recovered GeneMark_model.107205_t, internal, 5547, 5555
-recovered GeneMark_model.107205_t, internal, 5639, 5647
-recovered GeneMark_model.107205_t, internal, 5713, 5718
-recovered GeneMark_model.107205_t, internal, 5756, 5767
-recovered GeneMark_model.107205_t, internal, 5916, 5924
-recovered GeneMark_model.107205_t, internal, 5966, 5980
-recovered GeneMark_model.107205_t, internal, 6004, 6048
-recovered GeneMark_model.107205_t, internal, 6087, 6125
-recovered GeneMark_model.107205_t, internal, 6231, 6341
-recovered GeneMark_model.107205_t, internal, 6456, 6509
-recovered GeneMark_model.107205_t, internal, 6607, 6624

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107206_t
add_exon() Sorry, GeneMark_model.107206_t 1570-1696-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8489
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support