-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2928

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 174, 234
Couldn't classify 357, 507
Sorry, prediction GeneMark_model.110691_t fails validation.
(GGA)	 AG	174-234	GT	TGG
(GTA)	 AG	357-507	GT	CTG
-recovered GeneMark_model.110691_t, internal, 174, 234
-recovered GeneMark_model.110691_t, internal, 357, 507
Couldn't classify 371, 507
Sorry, prediction GlimmerHMM_glimmerT_63245-T1 fails validation.
(ATG)	 GC	198-234	GT	TGG
(CCA)	 AG	371-507	GT	CTG
-recovered GlimmerHMM_glimmerT_63245-T1, initial, 198, 234
-recovered GlimmerHMM_glimmerT_63245-T1, internal, 371, 507
Couldn't classify 174, 234
Couldn't classify 357, 507
Sorry, prediction snap_scaffold_2928-snap.1-T1 fails validation.
(GGA)	 AG	174-234	GT	TGG
(GTA)	 AG	357-507	GT	CTG
-recovered snap_scaffold_2928-snap.1-T1, internal, 174, 234
-recovered snap_scaffold_2928-snap.1-T1, internal, 357, 507
Couldn't classify 174, 234
Couldn't classify 357, 507
Sorry, prediction Augustus_model.g42218.t1 fails validation.
(GGA)	 AG	174-234	GT	TGG
(GTA)	 AG	357-507	GT	CTG
-recovered Augustus_model.g42218.t1, internal, 174, 234
-recovered Augustus_model.g42218.t1, internal, 357, 507

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1097
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support