-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2922

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 53, 97
Sorry, prediction GeneMark_model.110687_t fails validation.
(AGT)	 AG	53-97	GT	CAG
(AGA)	 AG	121-219	GT	GAG
(ACA)	 AG	242-250	GT	GAG
(AGA)	 AG	294-332	GT	GAG
(TAG)	 AG	364-375	GT	GAG
(ACT)	 AG	398-406	GT	GAG
(ACT)	 AG	428-436	GT	GAG
(ACA)	 AG	458-466	GT	GAG
(AGT)	 AG	491-541	GT	GAG
(TAG)	 AG	562-642	GT	GAG
(ACT)	 AG	674-695	CC	AAC
-recovered GeneMark_model.110687_t, terminal, 674, 695
-recovered GeneMark_model.110687_t, internal, 53, 97
-recovered GeneMark_model.110687_t, internal, 121, 219
-recovered GeneMark_model.110687_t, internal, 242, 250
-recovered GeneMark_model.110687_t, internal, 294, 332
-recovered GeneMark_model.110687_t, internal, 364, 375
-recovered GeneMark_model.110687_t, internal, 398, 406
-recovered GeneMark_model.110687_t, internal, 428, 436
-recovered GeneMark_model.110687_t, internal, 458, 466
-recovered GeneMark_model.110687_t, internal, 491, 541
-recovered GeneMark_model.110687_t, internal, 562, 642

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1099
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support