-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2920

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 10, 44
Sorry, prediction GeneMark_model.110686_t fails validation.
(ATC)	 AG	10-44	GT	GGG
(GAG)	 AG	227-286	GT	AGG
(CAA)	 AG	311-362	GT	GGG
(GAG)	 AG	395-432	GT	ATG
(GAA)	 AG	456-510	AA	GAA
-recovered GeneMark_model.110686_t, terminal, 456, 510
-recovered GeneMark_model.110686_t, internal, 10, 44
-recovered GeneMark_model.110686_t, internal, 227, 286
-recovered GeneMark_model.110686_t, internal, 311, 362
-recovered GeneMark_model.110686_t, internal, 395, 432
Couldn't classify 994, 1006
Sorry, prediction GeneMark_model.110685_t fails validation.
(ATG)	 AG	787-797	GT	ATG
(CGT)	 AG	845-970	GT	CAG
(GGG)	 AG	994-1006	GT	AAG
-recovered GeneMark_model.110685_t, initial, 787, 797
-recovered GeneMark_model.110685_t, internal, 787, 797
-recovered GeneMark_model.110685_t, internal, 845, 970
-recovered GeneMark_model.110685_t, internal, 994, 1006
Valid prediction for GlimmerHMM_glimmerT_63243-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1099
-exon list size: 18


building trellis

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10.0    
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25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
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75.0    
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85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support