-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2916

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 175, 306
Sorry, prediction GeneMark_model.110683_t fails validation.
(GGT)	 AG	175-306	GT	GAG
(GGG)	 AG	349-423	GC	GGG
(GGG)	 AG	444-470	GC	GAG
(GGG)	 AG	494-568	GC	GGG
(GGG)	 AG	589-709	GT	GAG
-recovered GeneMark_model.110683_t, terminal, 589, 709
-recovered GeneMark_model.110683_t, internal, 175, 306
-recovered GeneMark_model.110683_t, internal, 349, 423
-recovered GeneMark_model.110683_t, internal, 444, 470
-recovered GeneMark_model.110683_t, internal, 494, 568
-recovered GeneMark_model.110683_t, internal, 589, 709
Couldn't classify 133, 445
Sorry, prediction snap_scaffold_2916-snap.1-T1 fails validation.
(CAG)	 AG	133-445	GT	GGG
-recovered snap_scaffold_2916-snap.1-T1, internal, 133, 445

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63242-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63242-T1 782-1047-terminal-1 is invalid.
Couldn't classify 782, 1021
Sorry, prediction Augustus_model.g42214.t1 fails validation.
(TCT)	 AG	782-1021	GT	GGG
-recovered Augustus_model.g42214.t1, internal, 782, 1021

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1101
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support