-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2915

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63241-T1
Couldn't classify 35, 144
Couldn't classify 579, 793
Sorry, prediction GeneMark_model.110682_t fails validation.
(GAG)	 AG	35-144	GT	TGG
(AGT)	 AG	170-242	GT	GGG
(CAG)	 AG	579-793	GT	CAG
-recovered GeneMark_model.110682_t, internal, 35, 144
-recovered GeneMark_model.110682_t, internal, 170, 242
-recovered GeneMark_model.110682_t, internal, 579, 793
Couldn't classify 542, 891
Sorry, prediction snap_scaffold_2915-snap.1-T1 fails validation.
(AGC)	 AG	542-891	GT	AGG
-recovered snap_scaffold_2915-snap.1-T1, internal, 542, 891

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1101
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support