-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2909

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 11, 89
Couldn't classify 918, 932
Sorry, prediction GeneMark_model.110677_t fails validation.
(GGG)	 AG	11-89	GT	GCG
(CTG)	 AG	542-648	GT	CCG
(GGA)	 AG	690-698	GT	GGG
(GAG)	 AG	723-758	GT	AGG
(AGA)	 AG	795-815	GT	AGG
(GGA)	 AG	864-881	GT	AAG
(AGG)	 AG	918-932	GT	AGG
-recovered GeneMark_model.110677_t, internal, 11, 89
-recovered GeneMark_model.110677_t, internal, 542, 648
-recovered GeneMark_model.110677_t, internal, 690, 698
-recovered GeneMark_model.110677_t, internal, 723, 758
-recovered GeneMark_model.110677_t, internal, 795, 815
-recovered GeneMark_model.110677_t, internal, 864, 881
-recovered GeneMark_model.110677_t, internal, 918, 932

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 434, 582
Sorry, prediction Augustus_model.g42211.t1 fails validation.
(ATT)	 AG	434-582	GT	GGG
-recovered Augustus_model.g42211.t1, internal, 434, 582
Valid prediction for GlimmerHMM_glimmerT_63239-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1102
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support