-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2906

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 798, 885
Sorry, prediction Augustus_model.g42210.t1 fails validation.
(ATG)	 GC	58-120	GT	AGG
(GTG)	 AG	369-538	GT	AGG
(GTG)	 AG	798-885	GT	AGG
-recovered Augustus_model.g42210.t1, initial, 58, 120
-recovered Augustus_model.g42210.t1, internal, 369, 538
-recovered Augustus_model.g42210.t1, internal, 798, 885
Couldn't classify 46, 120
Couldn't classify 798, 885
Sorry, prediction snap_scaffold_2906-snap.1-T1 fails validation.
(GGC)	 AG	46-120	GT	AGG
(GTG)	 AG	369-538	GT	AGG
(GTG)	 AG	798-885	GT	AGG
-recovered snap_scaffold_2906-snap.1-T1, internal, 46, 120
-recovered snap_scaffold_2906-snap.1-T1, internal, 369, 538
-recovered snap_scaffold_2906-snap.1-T1, internal, 798, 885
Valid prediction for GlimmerHMM_glimmerT_63238-T1
Couldn't classify 46, 153
Couldn't classify 798, 885
Sorry, prediction GeneMark_model.110675_t fails validation.
(GGC)	 AG	46-153	GT	TTG
(GTG)	 AG	369-538	GT	AGG
(GTG)	 AG	798-885	GT	AGG
-recovered GeneMark_model.110675_t, internal, 46, 153
-recovered GeneMark_model.110675_t, internal, 369, 538
-recovered GeneMark_model.110675_t, internal, 798, 885

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1102
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support