-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2903

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 140
Sorry, prediction GeneMark_model.110673_t fails validation.
(GAG)	 AG	33-140	GT	GAG
(GGG)	 AG	171-176	GT	GAG
(GTC)	 AG	209-302	GT	AAG
-recovered GeneMark_model.110673_t, terminal, 209, 302
-recovered GeneMark_model.110673_t, internal, 33, 140
-recovered GeneMark_model.110673_t, internal, 171, 176
-recovered GeneMark_model.110673_t, internal, 209, 302

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 63, 208
Sorry, prediction GeneMark_model.110674_t fails validation.
(TGG)	 AG	63-208	GT	TGG
(GTG)	 AG	427-433	GT	ATG
(CGA)	 AG	536-544	GC	GAG
(AGA)	 AG	568-700	TT	GAT
-recovered GeneMark_model.110674_t, terminal, 568, 700
-recovered GeneMark_model.110674_t, internal, 63, 208
-recovered GeneMark_model.110674_t, internal, 427, 433
-recovered GeneMark_model.110674_t, internal, 536, 544

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1103
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support