-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2901

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 185, 241
Sorry, prediction GeneMark_model.110671_t fails validation.
(GCC)	 AG	185-241	GT	TCG
(CTG)	 AG	311-398	GT	GTG
(AAT)	 AG	825-878	GT	AAG
(GAG)	 AG	901-912	GT	AGG
-recovered GeneMark_model.110671_t, terminal, 901, 912
-recovered GeneMark_model.110671_t, internal, 185, 241
-recovered GeneMark_model.110671_t, internal, 311, 398
-recovered GeneMark_model.110671_t, internal, 825, 878
-recovered GeneMark_model.110671_t, internal, 901, 912
Couldn't classify 185, 370
Sorry, prediction snap_scaffold_2901-snap.1-T1 fails validation.
(GCC)	 AG	185-370	GT	CGG
-recovered snap_scaffold_2901-snap.1-T1, internal, 185, 370

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1103
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support