-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2893

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 154
Sorry, prediction GeneMark_model.110667_t fails validation.
(GCA)	 AG	38-154	GC	GAG
(AGA)	 AG	198-209	GC	AGG
(GCA)	 AG	234-248	GT	CAG
(GCA)	 AG	276-293	GC	AGG
(AGA)	 AG	316-327	GT	AGG
(GCA)	 AG	358-425	GT	TGG
(CAG)	 AG	531-583	AG	AAA
-recovered GeneMark_model.110667_t, terminal, 531, 583
-recovered GeneMark_model.110667_t, internal, 38, 154
-recovered GeneMark_model.110667_t, internal, 198, 209
-recovered GeneMark_model.110667_t, internal, 234, 248
-recovered GeneMark_model.110667_t, internal, 276, 293
-recovered GeneMark_model.110667_t, internal, 316, 327
-recovered GeneMark_model.110667_t, internal, 358, 425

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63236-T1
Couldn't classify 537, 644
Sorry, prediction snap_scaffold_2893-snap.1-T1 fails validation.
(ATG)	 AC	39-271	GT	GTG
(AAG)	 AG	537-644	GT	ATG
-recovered snap_scaffold_2893-snap.1-T1, initial, 39, 271
-recovered snap_scaffold_2893-snap.1-T1, internal, 537, 644
Couldn't classify 15, 271
Sorry, prediction GeneMark_model.110668_t fails validation.
(GAT)	 AG	15-271	GT	GTG
(GAG)	 AG	302-434	TT	AAT
-recovered GeneMark_model.110668_t, terminal, 302, 434
-recovered GeneMark_model.110668_t, internal, 15, 271

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1104
-exon list size: 23


building trellis

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44.0    
48.0    
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60.0    
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68.0    
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92.0    
96.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support