-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_289 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107196_t Couldn't classify 748, 833 Couldn't classify 7910, 8086 Sorry, prediction snap_scaffold_289-snap.2-T1 fails validation. (GGA) AG 748-833 GT ACG (GTG) AG 2170-2241 GT AGG (GCA) AG 4254-4346 GT AAG (TAC) AG 6866-6967 GT AGG (GTT) AG 7910-8086 GT GCG -recovered snap_scaffold_289-snap.2-T1, internal, 748, 833 -recovered snap_scaffold_289-snap.2-T1, internal, 2170, 2241 -recovered snap_scaffold_289-snap.2-T1, internal, 4254, 4346 -recovered snap_scaffold_289-snap.2-T1, internal, 6866, 6967 -recovered snap_scaffold_289-snap.2-T1, internal, 7910, 8086 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 8478, 8511 Sorry, prediction GeneMark_model.107195_t fails validation. (ATG) GC 5698-5706 GT AGG (ATA) AG 5964-6054 GT AGG (TGC) AG 6231-6391 GT AGG (GCG) AG 6615-6752 GT AGG (GAG) AG 7985-8034 GT GGG (GGA) AG 8079-8111 GT GAG (GGA) AG 8138-8173 GT AGG (GGA) AG 8198-8242 GT GAG (GGA) AG 8269-8325 GT AAG (GAT) AG 8367-8376 GT CTG (CAG) AG 8409-8443 GT AGG (GTC) AG 8478-8511 GT AGG -recovered GeneMark_model.107195_t, initial, 5698, 5706 -recovered GeneMark_model.107195_t, internal, 5964, 6054 -recovered GeneMark_model.107195_t, internal, 6231, 6391 -recovered GeneMark_model.107195_t, internal, 6615, 6752 -recovered GeneMark_model.107195_t, internal, 7985, 8034 -recovered GeneMark_model.107195_t, internal, 8079, 8111 -recovered GeneMark_model.107195_t, internal, 8138, 8173 -recovered GeneMark_model.107195_t, internal, 8198, 8242 -recovered GeneMark_model.107195_t, internal, 8269, 8325 -recovered GeneMark_model.107195_t, internal, 8367, 8376 -recovered GeneMark_model.107195_t, internal, 8409, 8443 -recovered GeneMark_model.107195_t, internal, 8478, 8511 Couldn't classify 453, 741 Sorry, prediction snap_scaffold_289-snap.1-T1 fails validation. (CAT) AG 453-741 GT ACG (GTG) AG 974-1125 GT GAG (TTA) AG 1545-1731 GT TTG (GTG) AG 1950-2052 GT AGG (GTA) AG 3333-3497 GT GGG (AAG) AG 3759-3883 GT AGG (GGC) AG 4143-4391 GT GTG (GTG) AG 4578-4686 GT AGG (GTG) AG 5001-5114 GT CAG (GGA) AG 5564-5706 GT AGG (ATA) AG 5964-6054 GT AGG (TGC) AG 6231-6391 GT AGG (GCG) AG 6615-6752 GT AGG (GAA) AG 8385-8483 TG GAT -recovered snap_scaffold_289-snap.1-T1, terminal, 8385, 8483 -recovered snap_scaffold_289-snap.1-T1, internal, 453, 741 -recovered snap_scaffold_289-snap.1-T1, internal, 974, 1125 -recovered snap_scaffold_289-snap.1-T1, internal, 1545, 1731 -recovered snap_scaffold_289-snap.1-T1, internal, 1950, 2052 -recovered snap_scaffold_289-snap.1-T1, internal, 3333, 3497 -recovered snap_scaffold_289-snap.1-T1, internal, 3759, 3883 -recovered snap_scaffold_289-snap.1-T1, internal, 4143, 4391 -recovered snap_scaffold_289-snap.1-T1, internal, 4578, 4686 -recovered snap_scaffold_289-snap.1-T1, internal, 5001, 5114 -recovered snap_scaffold_289-snap.1-T1, internal, 5564, 5706 -recovered snap_scaffold_289-snap.1-T1, internal, 5964, 6054 -recovered snap_scaffold_289-snap.1-T1, internal, 6231, 6391 -recovered snap_scaffold_289-snap.1-T1, internal, 6615, 6752 Valid prediction for GeneMark_model.107197_t Valid prediction for Augustus_model.g40985.t1 Couldn't classify 453, 699 Sorry, prediction GeneMark_model.107198_t fails validation. (CAT) AG 453-699 GT AGG (GTG) AG 974-1125 GT GAG (TTA) AG 1545-1686 GT AGG (GTG) AG 1950-2069 AC GAA -recovered GeneMark_model.107198_t, terminal, 1950, 2069 -recovered GeneMark_model.107198_t, internal, 453, 699 -recovered GeneMark_model.107198_t, internal, 974, 1125 -recovered GeneMark_model.107198_t, internal, 1545, 1686 Couldn't classify 453, 741 Sorry, prediction GlimmerHMM_glimmerT_61642-T1 fails validation. (CAT) AG 453-741 GT ACG (GTG) AG 974-1125 GT GAG (TTA) AG 1545-1686 GT AGG (GTG) AG 1950-2052 GT AGG (GTA) AG 3333-3497 GT GGG (AAG) AG 3759-3883 GT AGG (GGC) AG 4143-4391 GT GTG (GTG) AG 4578-4686 GT AGG (GTG) AG 5001-5114 GT CAG (GGA) AG 5564-5841 GA AGG -recovered GlimmerHMM_glimmerT_61642-T1, terminal, 5564, 5841 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 453, 741 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 974, 1125 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 1545, 1686 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 1950, 2052 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 3333, 3497 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 3759, 3883 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 4143, 4391 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 4578, 4686 -recovered GlimmerHMM_glimmerT_61642-T1, internal, 5001, 5114 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8102, rend_intergenic: 748 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 8554 -exon list size: 67 building trellis 1.4 2.9 4.3 5.8 7.2 8.7 10.1 11.6 13.0 14.5 15.9 17.4 18.8 20.3 21.7 23.2 24.6 26.1 27.5 29.0 30.4 31.9 33.3 34.8 36.2 37.7 39.1 40.6 42.0 43.5 44.9 46.4 47.8 49.3 50.7 52.2 53.6 55.1 56.5 58.0 59.4 60.9 62.3 63.8 65.2 66.7 68.1 69.6 71.0 72.5 73.9 75.4 76.8 78.3 79.7 81.2 82.6 84.1 85.5 87.0 88.4 89.9 91.3 92.8 94.2 95.7 97.1 98.6 -found 1 predictions from path traversal Error with prediction: snap lend_intergenic: 8102, rend_intergenic: 748 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support