-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2887

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 538, 555
Couldn't classify 965, 1069
Sorry, prediction GeneMark_model.110662_t fails validation.
(GAG)	 AG	538-555	GT	GAG
(AGA)	 AG	744-866	GT	AAG
(CTT)	 AG	965-1069	GT	AGG
-recovered GeneMark_model.110662_t, internal, 538, 555
-recovered GeneMark_model.110662_t, internal, 744, 866
-recovered GeneMark_model.110662_t, internal, 965, 1069
Valid prediction for GlimmerHMM_glimmerT_63234-T1
Valid prediction for snap_scaffold_2887-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1105
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support