-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2886

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 45, 80
Couldn't classify 487, 540
Sorry, prediction GeneMark_model.110661_t fails validation.
(GTG)	 AG	45-80	GT	GTG
(GGG)	 AG	396-422	GT	AGG
(AGA)	 AG	449-466	GT	AGG
(GGG)	 AG	487-540	GT	GAG
-recovered GeneMark_model.110661_t, internal, 45, 80
-recovered GeneMark_model.110661_t, internal, 396, 422
-recovered GeneMark_model.110661_t, internal, 449, 466
-recovered GeneMark_model.110661_t, internal, 487, 540

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1105
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support