-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2883

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 74
Couldn't classify 998, 1095
Sorry, prediction GeneMark_model.110659_t fails validation.
(GGA)	 AG	10-74	GT	GGG
(GGA)	 AG	587-595	GT	AAG
(TAG)	 AG	617-634	GT	GAG
(GAG)	 AG	658-672	GT	GAG
(GAG)	 AG	696-710	GT	GAG
(GGA)	 AG	737-745	GT	AAG
(GGA)	 AG	776-784	GT	AAG
(GAG)	 AG	810-842	GT	AGG
(GGG)	 AG	998-1095	GT	GAG
-recovered GeneMark_model.110659_t, internal, 10, 74
-recovered GeneMark_model.110659_t, internal, 587, 595
-recovered GeneMark_model.110659_t, internal, 617, 634
-recovered GeneMark_model.110659_t, internal, 658, 672
-recovered GeneMark_model.110659_t, internal, 696, 710
-recovered GeneMark_model.110659_t, internal, 737, 745
-recovered GeneMark_model.110659_t, internal, 776, 784
-recovered GeneMark_model.110659_t, internal, 810, 842
-recovered GeneMark_model.110659_t, internal, 998, 1095

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1106
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support