-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2882

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 640, 666
Couldn't classify 978, 1024
Sorry, prediction GeneMark_model.110658_t fails validation.
(TGA)	 AG	640-666	GT	CAG
(GGG)	 AG	752-838	GT	TGG
(GGA)	 AG	874-882	GT	CTG
(AAA)	 AG	909-944	GT	GTG
(GGA)	 AG	978-1024	GT	TGG
-recovered GeneMark_model.110658_t, internal, 640, 666
-recovered GeneMark_model.110658_t, internal, 752, 838
-recovered GeneMark_model.110658_t, internal, 874, 882
-recovered GeneMark_model.110658_t, internal, 909, 944
-recovered GeneMark_model.110658_t, internal, 978, 1024

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1106
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support