-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2874

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 69, 181
Couldn't classify 484, 615
Sorry, prediction snap_scaffold_2874-snap.1-T1 fails validation.
(GTG)	 AG	69-181	GT	AAG
(GTA)	 AG	484-615	GT	CAG
-recovered snap_scaffold_2874-snap.1-T1, internal, 69, 181
-recovered snap_scaffold_2874-snap.1-T1, internal, 484, 615
Couldn't classify 484, 615
Sorry, prediction GlimmerHMM_glimmerT_63232-T1 fails validation.
(ATG)	 CG	105-181	GT	AAG
(GTA)	 AG	484-615	GT	CAG
-recovered GlimmerHMM_glimmerT_63232-T1, initial, 105, 181
-recovered GlimmerHMM_glimmerT_63232-T1, internal, 484, 615
Couldn't classify 69, 181
Sorry, prediction Augustus_model.g42203.t1 fails validation.
(GTG)	 AG	69-181	GT	AAG
(GTA)	 AG	484-619	GT	GAG
-recovered Augustus_model.g42203.t1, terminal, 484, 619
-recovered Augustus_model.g42203.t1, internal, 69, 181
-recovered Augustus_model.g42203.t1, internal, 484, 619

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 561, 614
Sorry, prediction GeneMark_model.110653_t fails validation.
(GCT)	 AG	561-614	GT	GAG
(GGA)	 AG	650-749	AA	GAA
-recovered GeneMark_model.110653_t, terminal, 650, 749
-recovered GeneMark_model.110653_t, internal, 561, 614

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1107
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support