-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2871

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 513, 673
Sorry, prediction GeneMark_model.110651_t fails validation.
(GAG)	 AG	513-673	GT	ATG
-recovered GeneMark_model.110651_t, internal, 513, 673
Couldn't classify 499, 673
Couldn't classify 991, 1090
Sorry, prediction snap_scaffold_2871-snap.1-T1 fails validation.
(CTG)	 AG	499-673	GT	ATG
(GTC)	 AG	991-1090	GT	GGG
-recovered snap_scaffold_2871-snap.1-T1, internal, 499, 673
-recovered snap_scaffold_2871-snap.1-T1, internal, 991, 1090
Valid prediction for GlimmerHMM_glimmerT_63230-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63230-T1 499-677-terminal-1 is invalid.
Couldn't classify 499, 673
Couldn't classify 991, 1107
Sorry, prediction Augustus_model.g42201.t1 fails validation.
(CTG)	 AG	499-673	GT	ATG
(GTC)	 AG	991-1107		AA
-recovered Augustus_model.g42201.t1, internal, 499, 673

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1107
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support