-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_287

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8524, 8546
Sorry, prediction GeneMark_model.107190_t fails validation.
(ATG)	 CC	6640-6656	GT	AGG
(GGG)	 AG	6759-6792	GT	CGG
(CAC)	 AG	6811-6917	GT	CAG
(GAG)	 AG	6998-7075	GT	AAG
(GAC)	 AG	8419-8430	GT	GGG
(GGT)	 AG	8455-8499	GT	GGG
(GGT)	 AG	8524-8546	GT	GGG
-recovered GeneMark_model.107190_t, initial, 6640, 6656
-recovered GeneMark_model.107190_t, internal, 6759, 6792
-recovered GeneMark_model.107190_t, internal, 6811, 6917
-recovered GeneMark_model.107190_t, internal, 6998, 7075
-recovered GeneMark_model.107190_t, internal, 8419, 8430
-recovered GeneMark_model.107190_t, internal, 8455, 8499
-recovered GeneMark_model.107190_t, internal, 8524, 8546
Valid prediction for snap_scaffold_287-snap.2-T1
Valid prediction for GeneMark_model.107188_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107189_t
Couldn't classify 1609, 1790
Sorry, prediction snap_scaffold_287-snap.1-T1 fails validation.
(TGG)	 AG	1609-1790	GT	GGG
(ACT)	 AG	2450-2566	GT	GGG
(ACT)	 AG	3492-3630	GT	GAG
(CCA)	 AG	6390-6554	GT	AGG
(ACT)	 AG	7467-7621	CT	AGC
-recovered snap_scaffold_287-snap.1-T1, terminal, 7467, 7621
-recovered snap_scaffold_287-snap.1-T1, internal, 1609, 1790
-recovered snap_scaffold_287-snap.1-T1, internal, 2450, 2566
-recovered snap_scaffold_287-snap.1-T1, internal, 3492, 3630
-recovered snap_scaffold_287-snap.1-T1, internal, 6390, 6554
Valid prediction for Augustus_model.g40982.t1
Couldn't classify 1609, 1773
Sorry, prediction GlimmerHMM_glimmerT_61640-T1 fails validation.
(TGG)	 AG	1609-1773	GT	CGG
(CCA)	 AG	6390-6554	GT	AGG
(ACT)	 AG	7467-7621	CT	AGC
-recovered GlimmerHMM_glimmerT_61640-T1, terminal, 7467, 7621
-recovered GlimmerHMM_glimmerT_61640-T1, internal, 1609, 1773
-recovered GlimmerHMM_glimmerT_61640-T1, internal, 6390, 6554

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6955, rend_intergenic: 1695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8563
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6955, rend_intergenic: 1695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support