-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2864

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 52
Couldn't classify 900, 1090
Sorry, prediction GeneMark_model.110647_t fails validation.
(GAG)	 AG	9-52	GT	AGG
(ACA)	 AG	511-519	GT	GTG
(AGG)	 AG	647-676	GT	AGG
(AGG)	 AG	699-704	GT	AGG
(TGA)	 AG	729-746	GT	AGG
(GCA)	 AG	767-845	GT	TGG
(CCC)	 AG	900-1090	GT	CTG
-recovered GeneMark_model.110647_t, internal, 9, 52
-recovered GeneMark_model.110647_t, internal, 511, 519
-recovered GeneMark_model.110647_t, internal, 647, 676
-recovered GeneMark_model.110647_t, internal, 699, 704
-recovered GeneMark_model.110647_t, internal, 729, 746
-recovered GeneMark_model.110647_t, internal, 767, 845
-recovered GeneMark_model.110647_t, internal, 900, 1090

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 64, 309
Couldn't classify 632, 730
Sorry, prediction snap_scaffold_2864-snap.1-T1 fails validation.
(CCC)	 AG	64-309	GT	AGG
(CTG)	 AG	632-730	GT	AAG
-recovered snap_scaffold_2864-snap.1-T1, internal, 64, 309
-recovered snap_scaffold_2864-snap.1-T1, internal, 632, 730
Couldn't classify 632, 730
Sorry, prediction Augustus_model.g42199.t1 fails validation.
(ATG)	 CC	88-309	GT	AGG
(CTG)	 AG	632-730	GT	AAG
-recovered Augustus_model.g42199.t1, initial, 88, 309
-recovered Augustus_model.g42199.t1, internal, 632, 730
Valid prediction for GlimmerHMM_glimmerT_63229-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1109
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support