-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2862 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 35, 70 Sorry, prediction GeneMark_model.110645_t fails validation. (ACT) AG 35-70 GT AGG (TTT) AG 100-246 GT CGG (GGG) AG 537-566 GT GAG (GGA) AG 588-659 GT GAG (AGA) AG 681-767 GC AGG (AAA) AG 790-831 GC AGG (AGA) AG 858-920 GT GAG add_exon() Sorry, GeneMark_model.110645_t 858-920-terminal-1 is invalid. -recovered GeneMark_model.110645_t, terminal, 858, 920 -recovered GeneMark_model.110645_t, internal, 35, 70 -recovered GeneMark_model.110645_t, internal, 100, 246 -recovered GeneMark_model.110645_t, internal, 537, 566 -recovered GeneMark_model.110645_t, internal, 588, 659 -recovered GeneMark_model.110645_t, internal, 681, 767 -recovered GeneMark_model.110645_t, internal, 790, 831 -recovered GeneMark_model.110645_t, internal, 858, 920 Couldn't classify 1024, 1099 Sorry, prediction snap_scaffold_2862-snap.1-T1 fails validation. (ATG) CC 119-246 GT CGG (TAA) AG 1024-1099 GT AGG -recovered snap_scaffold_2862-snap.1-T1, initial, 119, 246 -recovered snap_scaffold_2862-snap.1-T1, internal, 1024, 1099 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 1109 -exon list size: 16 building trellis 5.6 11.1 16.7 22.2 27.8 33.3 38.9 44.4 50.0 55.6 61.1 66.7 72.2 77.8 83.3 88.9 94.4 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support