-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2859

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 37, 105
Couldn't classify 838, 998
Sorry, prediction GeneMark_model.110644_t fails validation.
(GGG)	 AG	37-105	GT	GAG
(ACT)	 AG	838-998	GT	CGG
-recovered GeneMark_model.110644_t, internal, 37, 105
-recovered GeneMark_model.110644_t, internal, 838, 998
Valid prediction for GlimmerHMM_glimmerT_63228-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63228-T1 838-1015-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1109
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support