-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2856

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 56, 193
Couldn't classify 477, 617
Sorry, prediction Augustus_model.g42197.t1 fails validation.
(ATA)	 AG	56-193	GT	AGG
(GAG)	 AG	477-617	GT	AGG
-recovered Augustus_model.g42197.t1, internal, 56, 193
-recovered Augustus_model.g42197.t1, internal, 477, 617
Couldn't classify 56, 193
Sorry, prediction snap_scaffold_2856-snap.1-T1 fails validation.
(ATA)	 AG	56-193	GT	AGG
(GAG)	 AG	477-1046	CC	GAC
-recovered snap_scaffold_2856-snap.1-T1, terminal, 477, 1046
-recovered snap_scaffold_2856-snap.1-T1, internal, 56, 193
Couldn't classify 56, 193
Sorry, prediction GeneMark_model.110642_t fails validation.
(ATA)	 AG	56-193	GT	AGG
(GAG)	 AG	477-1046	CC	GAC
-recovered GeneMark_model.110642_t, terminal, 477, 1046
-recovered GeneMark_model.110642_t, internal, 56, 193

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1110
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support