-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_285

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_285-snap.1-T1
Couldn't classify 115, 733
Sorry, prediction GeneMark_model.107185_t fails validation.
(CGA)	 AG	115-733	GT	AGG
(GAC)	 AG	1872-1967	GT	AGG
(CTG)	 AG	1996-2022	GA	AGG
-recovered GeneMark_model.107185_t, terminal, 1996, 2022
-recovered GeneMark_model.107185_t, internal, 115, 733
-recovered GeneMark_model.107185_t, internal, 1872, 1967
Valid prediction for snap_scaffold_285-snap.4-T1
Valid prediction for Augustus_model.g40980.t1
Couldn't classify 2485, 2718
Sorry, prediction pasa_asmbl_38579.p2 fails validation.
(ATG)	 TC	1854-1967	GT	AGG
(CGC)	 AG	2485-2718	GT	AGG
-recovered pasa_asmbl_38579.p2, initial, 1854, 1967
-recovered pasa_asmbl_38579.p2, internal, 2485, 2718
Valid prediction for GlimmerHMM_glimmerT_61637-T1
Valid prediction for snap_scaffold_285-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40981.t1
Valid prediction for GlimmerHMM_glimmerT_61639-T1
Valid prediction for GlimmerHMM_glimmerT_61638-T1
Valid prediction for GeneMark_model.107186_t
Valid prediction for snap_scaffold_285-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3682, rend_intergenic: 1854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8570
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3682, rend_intergenic: 1854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support