-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2847

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 270, 402
Sorry, prediction Augustus_model.g42196.t1 fails validation.
(CTG)	 AG	270-402	GT	AGG
(ACG)	 AG	597-715	GT	AGG
(CCC)	 AG	954-1070	GA	AAG
-recovered Augustus_model.g42196.t1, terminal, 954, 1070
-recovered Augustus_model.g42196.t1, internal, 270, 402
-recovered Augustus_model.g42196.t1, internal, 597, 715
Couldn't classify 270, 402
Couldn't classify 954, 1066
Sorry, prediction GeneMark_model.110639_t fails validation.
(CTG)	 AG	270-402	GT	AGG
(ACG)	 AG	597-715	GT	AGG
(CCC)	 AG	954-1066	GT	AAG
-recovered GeneMark_model.110639_t, internal, 270, 402
-recovered GeneMark_model.110639_t, internal, 597, 715
-recovered GeneMark_model.110639_t, internal, 954, 1066
Valid prediction for GlimmerHMM_glimmerT_63226-T1
Couldn't classify 270, 402
Couldn't classify 954, 1066
Sorry, prediction snap_scaffold_2847-snap.1-T1 fails validation.
(CTG)	 AG	270-402	GT	AGG
(ACG)	 AG	597-715	GT	AGG
(CCC)	 AG	954-1066	GT	AAG
-recovered snap_scaffold_2847-snap.1-T1, internal, 270, 402
-recovered snap_scaffold_2847-snap.1-T1, internal, 597, 715
-recovered snap_scaffold_2847-snap.1-T1, internal, 954, 1066

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1111
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support