-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2846

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 61
Sorry, prediction GeneMark_model.110638_t fails validation.
(AGG)	 AG	9-61	GT	AAG
(AAG)	 AG	88-239	GT	AGG
(AGA)	 AG	423-560	GT	AGG
(AGA)	 AG	610-664	GT	AGG
(AGG)	 AG	726-878	GT	AGG
(AGG)	 AG	928-957	GT	AGG
add_exon() Sorry, GeneMark_model.110638_t 423-560-terminal-1 is invalid.
-recovered GeneMark_model.110638_t, terminal, 423, 560
add_exon() Sorry, GeneMark_model.110638_t 726-878-terminal-1 is invalid.
-recovered GeneMark_model.110638_t, terminal, 726, 878
-recovered GeneMark_model.110638_t, terminal, 928, 957
-recovered GeneMark_model.110638_t, internal, 9, 61
-recovered GeneMark_model.110638_t, internal, 88, 239
-recovered GeneMark_model.110638_t, internal, 423, 560
-recovered GeneMark_model.110638_t, internal, 610, 664
-recovered GeneMark_model.110638_t, internal, 726, 878
-recovered GeneMark_model.110638_t, internal, 928, 957
Couldn't classify 141, 217
Sorry, prediction snap_scaffold_2846-snap.1-T1 fails validation.
(GCC)	 AG	141-217	GT	TGG
(GCT)	 AG	413-560	GT	AGG
(AGA)	 AG	610-720	GT	AGG
(GCA)	 AG	728-957	GT	AGG
add_exon() Sorry, snap_scaffold_2846-snap.1-T1 413-560-terminal-3 is invalid.
-recovered snap_scaffold_2846-snap.1-T1, terminal, 413, 560
add_exon() Sorry, snap_scaffold_2846-snap.1-T1 610-720-terminal-1 is invalid.
-recovered snap_scaffold_2846-snap.1-T1, terminal, 610, 720
-recovered snap_scaffold_2846-snap.1-T1, terminal, 728, 957
-recovered snap_scaffold_2846-snap.1-T1, internal, 141, 217
-recovered snap_scaffold_2846-snap.1-T1, internal, 413, 560
-recovered snap_scaffold_2846-snap.1-T1, internal, 610, 720
-recovered snap_scaffold_2846-snap.1-T1, internal, 728, 957
Sorry, intron length (6) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1112
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support