-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2843

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 414, 431
Couldn't classify 759, 767
Sorry, prediction GeneMark_model.110636_t fails validation.
(GGG)	 AG	414-431	GT	GAG
(CAA)	 AG	455-475	GT	GTG
(GGA)	 AG	499-543	GT	GAG
(AGA)	 AG	569-607	GT	ATG
(AGC)	 AG	631-639	GT	GTG
(AGA)	 AG	663-683	GT	GAG
(AGA)	 AG	705-719	GT	GAG
(AGA)	 AG	759-767	GT	AAG
-recovered GeneMark_model.110636_t, internal, 414, 431
-recovered GeneMark_model.110636_t, internal, 455, 475
-recovered GeneMark_model.110636_t, internal, 499, 543
-recovered GeneMark_model.110636_t, internal, 569, 607
-recovered GeneMark_model.110636_t, internal, 631, 639
-recovered GeneMark_model.110636_t, internal, 663, 683
-recovered GeneMark_model.110636_t, internal, 705, 719
-recovered GeneMark_model.110636_t, internal, 759, 767

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2843-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_63225-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63225-T1 166-325-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1112
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support