-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2842

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 391, 415
Couldn't classify 968, 1087
Sorry, prediction GeneMark_model.110635_t fails validation.
(CTG)	 AG	391-415	GT	CAG
(GGC)	 AG	930-944	GT	AGG
(AGA)	 AG	968-1087	GT	AGG
-recovered GeneMark_model.110635_t, internal, 391, 415
-recovered GeneMark_model.110635_t, internal, 930, 944
-recovered GeneMark_model.110635_t, internal, 968, 1087
Couldn't classify 981, 1112
Sorry, prediction Augustus_model.g42195.t1 fails validation.
(ATG)	 TG	981-1112		TG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1112
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support