-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2840

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 252, 307
Sorry, prediction Augustus_model.g42194.t1 fails validation.
(TCC)	 AG	252-307	GT	CGG
(CAC)	 AG	509-656	GA	AAG
-recovered Augustus_model.g42194.t1, terminal, 509, 656
-recovered Augustus_model.g42194.t1, internal, 252, 307

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 36, 56
Couldn't classify 491, 564
Sorry, prediction GeneMark_model.110634_t fails validation.
(GGG)	 AG	36-56	GT	AGG
(AGA)	 AG	106-132	GT	GGG
(AAG)	 AG	164-251	GT	GGG
(GGA)	 AG	491-564	GT	GCG
-recovered GeneMark_model.110634_t, internal, 36, 56
-recovered GeneMark_model.110634_t, internal, 106, 132
-recovered GeneMark_model.110634_t, internal, 164, 251
-recovered GeneMark_model.110634_t, internal, 491, 564
Valid prediction for snap_scaffold_2840-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1113
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support