-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_284

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1717, 1797
Couldn't classify 6233, 6378
Sorry, prediction snap_scaffold_284-snap.1-T1 fails validation.
(GAA)	 AG	1717-1797	GT	AGG
(GTG)	 AG	2271-2367	GT	AGG
(CCT)	 AG	2518-2688	GT	TGG
(GGA)	 AG	2766-2884	GT	GGG
(ACT)	 AG	3001-3128	GT	GGG
(GTT)	 AG	3562-3608	GT	AGG
(CCG)	 AG	3727-3894	GT	AGG
(ACT)	 AG	4189-4289	GT	AGG
(GAG)	 AG	4757-4906	GT	AGG
(GCC)	 AG	4986-5094	GT	AGG
(GCC)	 AG	5168-5304	GT	AGG
(GGG)	 AG	5406-5598	GT	GGG
(ATG)	 AG	6112-6183	GT	GAG
(CAT)	 AG	6233-6378	GT	TTG
add_exon() Sorry, snap_scaffold_284-snap.1-T1 6112-6183-initial-1 is invalid.
-recovered snap_scaffold_284-snap.1-T1, initial, 6112, 6183
add_exon() Sorry, snap_scaffold_284-snap.1-T1 4986-5094-terminal-3 is invalid.
-recovered snap_scaffold_284-snap.1-T1, terminal, 4986, 5094
-recovered snap_scaffold_284-snap.1-T1, internal, 1717, 1797
-recovered snap_scaffold_284-snap.1-T1, internal, 2271, 2367
-recovered snap_scaffold_284-snap.1-T1, internal, 2518, 2688
-recovered snap_scaffold_284-snap.1-T1, internal, 2766, 2884
-recovered snap_scaffold_284-snap.1-T1, internal, 3001, 3128
-recovered snap_scaffold_284-snap.1-T1, internal, 3562, 3608
-recovered snap_scaffold_284-snap.1-T1, internal, 3727, 3894
-recovered snap_scaffold_284-snap.1-T1, internal, 4189, 4289
-recovered snap_scaffold_284-snap.1-T1, internal, 4757, 4906
-recovered snap_scaffold_284-snap.1-T1, internal, 4986, 5094
-recovered snap_scaffold_284-snap.1-T1, internal, 5168, 5304
-recovered snap_scaffold_284-snap.1-T1, internal, 5406, 5598
-recovered snap_scaffold_284-snap.1-T1, internal, 6112, 6183
-recovered snap_scaffold_284-snap.1-T1, internal, 6233, 6378
Valid prediction for GlimmerHMM_glimmerT_61634-T1
Valid prediction for Augustus_model.g40979.t1
Couldn't classify 6112, 6183
Sorry, prediction GlimmerHMM_glimmerT_61636-T1 fails validation.
(ATG)	 CA	5001-5094	GT	AGG
(GCC)	 AG	5168-5304	GT	AGG
(GCA)	 AG	5424-5598	GT	GGG
(ATG)	 AG	6112-6183	GT	GAG
-recovered GlimmerHMM_glimmerT_61636-T1, initial, 5001, 5094
add_exon() Sorry, GlimmerHMM_glimmerT_61636-T1 6112-6183-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_61636-T1, initial, 6112, 6183
-recovered GlimmerHMM_glimmerT_61636-T1, internal, 5168, 5304
-recovered GlimmerHMM_glimmerT_61636-T1, internal, 5424, 5598
-recovered GlimmerHMM_glimmerT_61636-T1, internal, 6112, 6183
Valid prediction for GeneMark_model.107183_t
Valid prediction for GeneMark_model.107181_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107182_t
Couldn't classify 475, 570
Sorry, prediction GeneMark_model.107184_t fails validation.
(AGG)	 AG	475-570	GT	GAG
(ACA)	 AG	607-792	GT	AGG
(AGG)	 AG	822-854	GT	CAG
(AGA)	 AG	886-906	GT	GGG
(AGA)	 AG	934-957	GT	AGG
(GAG)	 AG	1000-1005	GT	AAG
(AAG)	 AG	1075-1152	GT	AGG
(ACG)	 AG	1176-1257	CC	AAC
-recovered GeneMark_model.107184_t, terminal, 1176, 1257
-recovered GeneMark_model.107184_t, internal, 475, 570
-recovered GeneMark_model.107184_t, internal, 607, 792
-recovered GeneMark_model.107184_t, internal, 822, 854
-recovered GeneMark_model.107184_t, internal, 886, 906
-recovered GeneMark_model.107184_t, internal, 934, 957
-recovered GeneMark_model.107184_t, internal, 1000, 1005
-recovered GeneMark_model.107184_t, internal, 1075, 1152
Valid prediction for snap_scaffold_284-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61635-T1
Valid prediction for snap_scaffold_284-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6378, rend_intergenic: 3244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8592
-exon list size: 77


building trellis

1.3    
2.5    
3.8    
5.1    
6.3    
7.6    
8.9    
10.1    
11.4    
12.7    
13.9    
15.2    
16.5    
17.7    
19.0    
20.3    
21.5    
22.8    
24.1    
25.3    
26.6    
27.8    
29.1    
30.4    
31.6    
32.9    
34.2    
35.4    
36.7    
38.0    
39.2    
40.5    
41.8    
43.0    
44.3    
45.6    
46.8    
48.1    
49.4    
50.6    
51.9    
53.2    
54.4    
55.7    
57.0    
58.2    
59.5    
60.8    
62.0    
63.3    
64.6    
65.8    
67.1    
68.4    
69.6    
70.9    
72.2    
73.4    
74.7    
75.9    
77.2    
78.5    
79.7    
81.0    
82.3    
83.5    
84.8    
86.1    
87.3    
88.6    
89.9    
91.1    
92.4    
93.7    
94.9    
96.2    
97.5    
98.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6378, rend_intergenic: 3244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support