-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2838

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1084, 1095
Sorry, prediction GeneMark_model.110633_t fails validation.
(ATG)	 TA	927-1054	GT	CAG
(GGA)	 AG	1084-1095	GT	GGG
-recovered GeneMark_model.110633_t, initial, 927, 1054
-recovered GeneMark_model.110633_t, internal, 1084, 1095

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1057, 1105
Sorry, prediction GeneMark_model.110632_t fails validation.
(ATG)	 CG	330-387	GT	AAG
(GAG)	 AG	420-546	GT	AGG
(GAC)	 AG	590-679	GT	CTG
(GTG)	 AG	730-735	GT	GGG
(CTC)	 AG	1057-1105	GT	CGG
-recovered GeneMark_model.110632_t, initial, 330, 387
-recovered GeneMark_model.110632_t, internal, 420, 546
-recovered GeneMark_model.110632_t, internal, 590, 679
-recovered GeneMark_model.110632_t, internal, 730, 735
-recovered GeneMark_model.110632_t, internal, 1057, 1105
Couldn't classify 1057, 1113
Sorry, prediction Augustus_model.g42193.t1 fails validation.
(ATG)	 GC	609-679	GT	CTG
(CTC)	 AG	1057-1113		CA
-recovered Augustus_model.g42193.t1, initial, 609, 679

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1113
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support