-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_283

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_283-snap.2-T1
Valid prediction for Augustus_model.g40978.t1
Valid prediction for GlimmerHMM_glimmerT_61633-T1
Couldn't classify 6345, 6564
Sorry, prediction GeneMark_model.107180_t fails validation.
(ATG)	 AG	5760-5947	GT	GAG
(TCG)	 AG	6345-6564	GT	TGG
-recovered GeneMark_model.107180_t, initial, 5760, 5947
-recovered GeneMark_model.107180_t, internal, 5760, 5947
-recovered GeneMark_model.107180_t, internal, 6345, 6564

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61631-T1
Valid prediction for snap_scaffold_283-snap.3-T1
Couldn't classify 8193, 8405
Sorry, prediction GeneMark_model.107179_t fails validation.
(ATG)	 GG	6089-6104	GT	TGG
(CCA)	 AG	6794-6809	GT	CCG
(AGG)	 AG	6850-7056	GT	CCG
(CGT)	 AG	7215-7426	GT	GGG
(AGA)	 AG	7833-8000	GT	AGG
(GGA)	 AG	8193-8405	GT	TGG
-recovered GeneMark_model.107179_t, initial, 6089, 6104
-recovered GeneMark_model.107179_t, internal, 6794, 6809
-recovered GeneMark_model.107179_t, internal, 6850, 7056
-recovered GeneMark_model.107179_t, internal, 7215, 7426
-recovered GeneMark_model.107179_t, internal, 7833, 8000
-recovered GeneMark_model.107179_t, internal, 8193, 8405
Couldn't classify 8306, 8415
Sorry, prediction snap_scaffold_283-snap.1-T1 fails validation.
(ATG)	 AC	6890-7056	GT	CCG
(CGT)	 AG	7215-7426	GT	GGG
(AGA)	 AG	7833-8000	GT	AGG
(GGA)	 AG	8193-8287	GT	TAG
(CGC)	 AG	8306-8415	GT	GTG
-recovered snap_scaffold_283-snap.1-T1, initial, 6890, 7056
-recovered snap_scaffold_283-snap.1-T1, internal, 7215, 7426
-recovered snap_scaffold_283-snap.1-T1, internal, 7833, 8000
-recovered snap_scaffold_283-snap.1-T1, internal, 8193, 8287
-recovered snap_scaffold_283-snap.1-T1, internal, 8306, 8415
Valid prediction for GlimmerHMM_glimmerT_61632-T1
Couldn't classify 8193, 8392
Sorry, prediction Augustus_model.g40977.t1 fails validation.
(ATG)	 AC	6890-7056	GT	CCG
(CGT)	 AG	7215-7426	GT	GGG
(AGA)	 AG	7833-8000	GT	AGG
(GGA)	 AG	8193-8392	GT	CCG
-recovered Augustus_model.g40977.t1, initial, 6890, 7056
-recovered Augustus_model.g40977.t1, internal, 7215, 7426
-recovered Augustus_model.g40977.t1, internal, 7833, 8000
-recovered Augustus_model.g40977.t1, internal, 8193, 8392

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1707, rend_intergenic: 311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8596
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1707, rend_intergenic: 311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support