-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2828

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1020, 1076
Sorry, prediction GeneMark_model.110628_t fails validation.
(ATG)	 GA	300-319	GT	GAG
(AGA)	 AG	376-411	GT	ATG
(AGA)	 AG	964-978	GT	GAG
(AGG)	 AG	1020-1076	GT	GAG
-recovered GeneMark_model.110628_t, initial, 300, 319
-recovered GeneMark_model.110628_t, internal, 376, 411
-recovered GeneMark_model.110628_t, internal, 964, 978
-recovered GeneMark_model.110628_t, internal, 1020, 1076

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 874, 1090
Sorry, prediction snap_scaffold_2828-snap.1-T1 fails validation.
(CCG)	 AG	874-1090	GT	CAG
-recovered snap_scaffold_2828-snap.1-T1, internal, 874, 1090

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1115
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support