-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2827

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 468, 519
Couldn't classify 738, 757
Sorry, prediction GeneMark_model.110627_t fails validation.
(GAA)	 AG	468-519	GT	GTG
(GAG)	 AG	587-600	GT	AGG
(GGA)	 AG	624-629	GT	AGG
(GCT)	 AG	655-714	GT	AGG
(GGG)	 AG	738-757	GT	GAG
-recovered GeneMark_model.110627_t, internal, 468, 519
-recovered GeneMark_model.110627_t, internal, 587, 600
-recovered GeneMark_model.110627_t, internal, 624, 629
-recovered GeneMark_model.110627_t, internal, 655, 714
-recovered GeneMark_model.110627_t, internal, 738, 757

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1115
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support