-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2826

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 249, 400
Couldn't classify 903, 974
Sorry, prediction GeneMark_model.110626_t fails validation.
(GGG)	 AG	249-400	GC	AGG
(GTG)	 AG	672-857	GT	GGG
(GCC)	 AG	903-974	GT	AGG
-recovered GeneMark_model.110626_t, internal, 249, 400
-recovered GeneMark_model.110626_t, internal, 672, 857
-recovered GeneMark_model.110626_t, internal, 903, 974
Valid prediction for GlimmerHMM_glimmerT_63224-T1
Valid prediction for Augustus_model.g42192.t1
Couldn't classify 903, 974
Sorry, prediction snap_scaffold_2826-snap.1-T1 fails validation.
(ATG)	 CG	604-640	GT	CCG
(GTG)	 AG	672-857	GT	GGG
(GCC)	 AG	903-974	GT	AGG
-recovered snap_scaffold_2826-snap.1-T1, initial, 604, 640
-recovered snap_scaffold_2826-snap.1-T1, internal, 672, 857
-recovered snap_scaffold_2826-snap.1-T1, internal, 903, 974

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1115
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support