-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2824

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 897, 1055
Sorry, prediction snap_scaffold_2824-snap.1-T1 fails validation.
(ATG)	 TG	311-436	GT	TGG
(CAG)	 AG	897-1055	GT	TGG
-recovered snap_scaffold_2824-snap.1-T1, initial, 311, 436
-recovered snap_scaffold_2824-snap.1-T1, internal, 897, 1055
Couldn't classify 43, 66
Couldn't classify 875, 1057
Sorry, prediction GeneMark_model.110625_t fails validation.
(AGA)	 AG	43-66	GT	GGG
(GAA)	 AG	116-130	GT	GGG
(GAG)	 AG	155-260	GT	GAG
(ACA)	 AG	739-761	GT	GGG
(ACG)	 AG	799-837	GT	GAG
(TCT)	 AG	875-1057	GT	GTG
-recovered GeneMark_model.110625_t, internal, 43, 66
-recovered GeneMark_model.110625_t, internal, 116, 130
-recovered GeneMark_model.110625_t, internal, 155, 260
-recovered GeneMark_model.110625_t, internal, 739, 761
-recovered GeneMark_model.110625_t, internal, 799, 837
-recovered GeneMark_model.110625_t, internal, 875, 1057

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 621, 705
Sorry, prediction Augustus_model.g42191.t1 fails validation.
(ATG)	 TG	137-300	GT	ATG
(CGC)	 AG	621-705	GT	TGG
-recovered Augustus_model.g42191.t1, initial, 137, 300
-recovered Augustus_model.g42191.t1, internal, 621, 705

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1116
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support