-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2820

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 36, 56
Sorry, prediction GeneMark_model.110623_t fails validation.
(AGC)	 AG	36-56	GT	GGG
(GTC)	 AG	509-519	GT	AGG
(TCA)	 AG	636-645	GT	GGG
(AGA)	 AG	801-854	GT	GAG
(AGG)	 AG	880-907	TC	AGT
-recovered GeneMark_model.110623_t, terminal, 880, 907
-recovered GeneMark_model.110623_t, internal, 36, 56
-recovered GeneMark_model.110623_t, internal, 509, 519
-recovered GeneMark_model.110623_t, internal, 636, 645
-recovered GeneMark_model.110623_t, internal, 801, 854

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1116
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support